Caroline Ajo-Franklin


Staff Scientist, Biological Nanostructures Facility
cajo-franklin@lbl.gov, 510.486.4299

 

Research interests

Biological systems precisely create and order structures on the nanoscale, endowing a variety of functionalities upon these assemblies. My research focuses on genetically re-engineering microbes to create and assemble novel nanostructured materials, particularly those with potential applications in renewable energy and environmental remediation technologies. In doing so, we face key challenges: Can we preserve in vivo self-assembly of biomolecules to use in vitro systems? Can we make seamless interfaces between living systems and non-living systems?

Current projects:

  • Electrical connections to living cells
    Recently, multiple groups have reported that a variety of bacterial species form bacterial nanowires - conductive filaments, on the order of one hundred nanometers in width and many microns in length. These structures are unique in their apparent ability to transport electrons from the intracellular space to an electrode microns away. Taking these structures as inspiration, we are creating a set of genes that will re-program a host cell to will produce artificial bacterial nanowires. These high surface area living conductors will open new doors in the areas of biosensing, electrical manipulation of cellular function, and higher efficiency conversion of bio-energy to electrical energy.
  • Bio-molecular recognition for nanostructure self- assembly
    Ordering of nanostructures into well-defined assemblies is one of the most exciting challenges in nanoscience. Starting with DNA folded into nano-sized breadboards, we are using molecular recognition of DNA by proteins to functionalize this scaffold with protein-based nanostructures. This will allow us access to structures with both short-range and long-range order, and geometries which can dynamically re-programmed with small molecules.

Selected publications:

  1. Ajo-Franklin, C. M.; Drubin, D. A.; Eskin, J. A.; Gee, P. S; Landgraf, D.; Phillips, I., Silver, P. A, “Rational Design of Memory in Eukaryotic Cells.” Genes Dev., in press.
  2. Ajo-Franklin, C. M.; Ganesan, P. V.; Boxer, S. G. “Variable Incidence Angle Fluorescence Interference Contrast Microscopy for z-Imaging Single Objects.” Biophys. J. (2005), 89, 2759-2769.
  3. Ajo-Franklin, C. M.; Ganesan, P. V.; Boxer, S. G. “High refractive index substrates for fluorescence microscopy of biological interfaces with high z contrast.” Proc. Natl. Acad. Sci. USA (2001), 98, 13643-13648.

Education

Ph.D. Chemistry 2004, Stanford University, Stanford, CA; Thesis Advisor: Prof. Steven G. Boxer; "High Resolution Fluorescence Microscopy for Membrane Interfaces”.

Past professional positions

2005 – 2007   Postdoctoral Fellow, Laboratory of Prof. Pamela Silver
2004 (summer) Intern, New Technologies, Kosan Biosciences, Hayward, CA
1995 (summer) University of Texas, Austin, TX

Links           

My website: http://www.ajofranklin.com
Openwetware – a great place to find and share protocols: http://openwetware.org/


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